PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G145800.1
Common NameB456_007G145800, LOC105803199
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 25338.2 Da    PI: 4.7079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G145800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1885135255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Gorai.007G145800.1  85 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAAIAYDQAAFSMKG 135
                         69*******.**********44465..************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-1984144No hitNo description
PROSITE profilePS5103222.39285143IPR001471AP2/ERF domain
SMARTSM003803.6E-3785149IPR001471AP2/ERF domain
PfamPF008473.3E-1285135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2985144IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2285145IPR016177DNA-binding domain
PRINTSPR003673.9E-108697IPR001471AP2/ERF domain
PRINTSPR003673.9E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEEPTLFQNS TTPDFSPESS SFGCWDDLLL DYNISIPFSF NDLDEMIWMD SLGDGPKEST  60
ESNSTNSVRE EEVTSDANHP KKEKSYRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDSAE  120
AAAIAYDQAA FSMKGSLATL NFPVEVVRES LQDIKYRCEE GCSPVVALKK RHCLRKRSKS  180
SNKNTKQNVA PTPLQHQNLV VLEDLGADYL EQLLTSCETE ANVPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2884146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2882146266ATERF1
3gcc_A3e-2882146266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4302170.0KF430217.1 Gossypium hirsutum transcription factor ERF10 (ERF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490691.11e-169PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-61ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2SD891e-169A0A0D2SD89_G
STRINGPOPTR_0002s04020.19e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-50ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]